J3_9JNS_002
3D structure
- PDB id
- 9JNS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S precursor - Erm complex (C-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9JNS|1|A|U|34, 9JNS|1|A|U|448, 9JNS|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JNS_002 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3988
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9JNS|1|A|C|32
9JNS|1|A|C|33
9JNS|1|A|U|34
9JNS|1|A|G|35
*
9JNS|1|A|C|445
9JNS|1|A|G|446
9JNS|1|A|A|447
9JNS|1|A|U|448
9JNS|1|A|A|449
9JNS|1|A|G|450
9JNS|1|A|U|451
9JNS|1|A|G|452
9JNS|1|A|A|453
9JNS|1|A|A|454
9JNS|1|A|C|455
9JNS|1|A|C|456
9JNS|1|A|A|457
9JNS|1|A|G|458
9JNS|1|A|U|459
9JNS|1|A|A|460
9JNS|1|A|C|461
*
9JNS|1|A|G|468
9JNS|1|A|G|469
9JNS|1|A|A|470
9JNS|1|A|A|471
9JNS|1|A|A|472
9JNS|1|A|G|473
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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