J3_9JNS_004

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9JNS|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JNS_004 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.142

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JNS|1|A|G|297
9JNS|1|A|G|298
9JNS|1|A|A|299
9JNS|1|A|A|300
9JNS|1|A|G|301
*
9JNS|1|A|C|316
9JNS|1|A|G|317
9JNS|1|A|C|318
9JNS|1|A|G|319
9JNS|1|A|A|320
9JNS|1|A|U|321
9JNS|1|A|A|322
9JNS|1|A|C|323
9JNS|1|A|A|324
9JNS|1|A|G|325
*
9JNS|1|A|C|337
9JNS|1|A|G|338
9JNS|1|A|U|339
9JNS|1|A|A|340
9JNS|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24