J3_9JPM_011

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9JPM|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPM_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1795

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9JPM|1|A|C|990
9JPM|1|A|U|991
9JPM|1|A|U|992
9JPM|1|A|G|993
9JPM|1|A|A|994
9JPM|1|A|C|995
9JPM|1|A|A|996
9JPM|1|A|U|997
*
9JPM|1|A|A|1044
9JPM|1|A|C|1045
9JPM|1|A|A|1046
9JPM|1|A|G|1047
*
9JPM|1|A|C|1210
9JPM|1|A|U|1211
9JPM|1|A|U|1212
9JPM|1|A|A|1213
9JPM|1|A|C|1214
9JPM|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14