J3_9JPM_014

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

9JPM|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPM_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1727

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9JPM|1|A|U|1073
9JPM|1|A|G|1074
*
9JPM|1|A|U|1083
9JPM|1|A|G|1084
9JPM|1|A|U|1085
9JPM|1|A|U|1086
*
9JPM|1|A|G|1099
9JPM|1|A|C|1100
9JPM|1|A|A|1101
9JPM|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

30S ribosomal protein S5

Chain U

30S ribosomal protein S21