J3_9JPM_022

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9JPM|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPM_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0658

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JPM|1|a|G|297
9JPM|1|a|G|298
9JPM|1|a|A|299
9JPM|1|a|A|300
9JPM|1|a|G|301
*
9JPM|1|a|C|316
9JPM|1|a|G|317
9JPM|1|a|C|318
9JPM|1|a|G|319
9JPM|1|a|A|320
9JPM|1|a|U|321
9JPM|1|a|A|322
9JPM|1|a|C|323
9JPM|1|a|A|324
9JPM|1|a|G|325
*
9JPM|1|a|C|337
9JPM|1|a|G|338
9JPM|1|a|U|339
9JPM|1|a|A|340
9JPM|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24