J3_9JPO_007

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.112

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9JPO|1|A|C|936
9JPO|1|A|A|937
9JPO|1|A|A|938
9JPO|1|A|G|939
*
9JPO|1|A|C|1344
9JPO|1|A|U|1345
9JPO|1|A|A|1346
9JPO|1|A|G|1347
9JPO|1|A|U|1348
9JPO|1|A|A|1349
9JPO|1|A|A|1350
*
9JPO|1|A|U|1372
9JPO|1|A|G|1373
9JPO|1|A|A|1374
9JPO|1|A|A|1375
9JPO|1|A|U|1376
9JPO|1|A|A|1377
9JPO|1|A|C|1378
9JPO|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9