J3_9JPO_010
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 9JPO|1|A|U|1212, 9JPO|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9JPO_010 not in the Motif Atlas
- Geometric match to J3_8B0X_008
- Geometric discrepancy: 0.082
- The information below is about J3_8B0X_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9JPO|1|A|C|990
9JPO|1|A|U|991
9JPO|1|A|U|992
9JPO|1|A|G|993
*
9JPO|1|A|C|1045
9JPO|1|A|A|1046
9JPO|1|A|G|1047
*
9JPO|1|A|C|1210
9JPO|1|A|U|1211
9JPO|1|A|U|1212
9JPO|1|A|A|1213
9JPO|1|A|C|1214
9JPO|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
Coloring options: