J3_9JPO_011

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9JPO|1|A|U|1212, 9JPO|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1736

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9JPO|1|A|C|990
9JPO|1|A|U|991
9JPO|1|A|U|992
9JPO|1|A|G|993
9JPO|1|A|A|994
9JPO|1|A|C|995
9JPO|1|A|A|996
9JPO|1|A|U|997
*
9JPO|1|A|A|1044
9JPO|1|A|C|1045
9JPO|1|A|A|1046
9JPO|1|A|G|1047
*
9JPO|1|A|C|1210
9JPO|1|A|U|1211
9JPO|1|A|U|1212
9JPO|1|A|A|1213
9JPO|1|A|C|1214
9JPO|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14