J3_9JPO_023

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPO_023 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1054

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9JPO|1|a|C|698
9JPO|1|a|A|699
9JPO|1|a|G|700
*
9JPO|1|a|C|732
9JPO|1|a|G|733
9JPO|1|a|A|734
9JPO|1|a|A|735
9JPO|1|a|C|736
*
9JPO|1|a|G|760
9JPO|1|a|A|761
9JPO|1|a|U|762
9JPO|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2