J3_9JPP_022

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9JPP|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPP_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0531

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JPP|1|a|G|297
9JPP|1|a|G|298
9JPP|1|a|A|299
9JPP|1|a|A|300
9JPP|1|a|G|301
*
9JPP|1|a|C|316
9JPP|1|a|G|317
9JPP|1|a|C|318
9JPP|1|a|G|319
9JPP|1|a|A|320
9JPP|1|a|U|321
9JPP|1|a|A|322
9JPP|1|a|C|323
9JPP|1|a|A|324
9JPP|1|a|G|325
*
9JPP|1|a|C|337
9JPP|1|a|G|338
9JPP|1|a|U|339
9JPP|1|a|A|340
9JPP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24