J3_9JPP_028

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JPP_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1023

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9JPP|1|a|G|1424
9JPP|1|a|G|1425
9JPP|1|a|G|1426
9JPP|1|a|A|1427
9JPP|1|a|C|1428
9JPP|1|a|G|1429
*
9JPP|1|a|C|1564
9JPP|1|a|C|1565
*
9JPP|1|a|G|1568
9JPP|1|a|A|1569
9JPP|1|a|A|1570
9JPP|1|a|A|1571
9JPP|1|a|A|1572
9JPP|1|a|G|1573
9JPP|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2