J3_9JQ2_011

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9JQ2|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JQ2_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1792

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9JQ2|1|A|C|990
9JQ2|1|A|U|991
9JQ2|1|A|U|992
9JQ2|1|A|G|993
9JQ2|1|A|A|994
9JQ2|1|A|C|995
9JQ2|1|A|A|996
9JQ2|1|A|U|997
*
9JQ2|1|A|A|1044
9JQ2|1|A|C|1045
9JQ2|1|A|A|1046
9JQ2|1|A|G|1047
*
9JQ2|1|A|C|1210
9JQ2|1|A|U|1211
9JQ2|1|A|U|1212
9JQ2|1|A|A|1213
9JQ2|1|A|C|1214
9JQ2|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14