J3_9JQ2_018

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JQ2_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0605

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9JQ2|1|a|G|30
9JQ2|1|a|C|31
*
9JQ2|1|a|G|474
9JQ2|1|a|C|475
9JQ2|1|a|G|476
9JQ2|1|a|A|477
9JQ2|1|a|A|478
9JQ2|1|a|A|479
9JQ2|1|a|A|480
9JQ2|1|a|G|481
*
9JQ2|1|a|C|509
9JQ2|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24