J3_9JSR_001

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JSR_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1707

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9JSR|1|A|G|30
9JSR|1|A|C|31
*
9JSR|1|A|G|474
9JSR|1|A|C|475
9JSR|1|A|G|476
9JSR|1|A|A|477
9JSR|1|A|A|478
9JSR|1|A|A|479
9JSR|1|A|A|480
9JSR|1|A|G|481
*
9JSR|1|A|C|509
9JSR|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24