J3_9JSR_004

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9JSR|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9JSR_004 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.1137

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9JSR|1|A|G|297
9JSR|1|A|G|298
9JSR|1|A|A|299
9JSR|1|A|A|300
9JSR|1|A|G|301
*
9JSR|1|A|C|316
9JSR|1|A|G|317
9JSR|1|A|C|318
9JSR|1|A|G|319
9JSR|1|A|A|320
9JSR|1|A|U|321
9JSR|1|A|A|322
9JSR|1|A|C|323
9JSR|1|A|A|324
9JSR|1|A|G|325
*
9JSR|1|A|C|337
9JSR|1|A|G|338
9JSR|1|A|U|339
9JSR|1|A|A|340
9JSR|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24