J3_9K0Z_009
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 9K0Z|1|A|A|957, 9K0Z|1|A|G|958, 9K0Z|1|A|A|960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_009 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0968
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9K0Z|1|A|A|937
9K0Z|1|A|U|938
9K0Z|1|A|U|939
9K0Z|1|A|A|940
9K0Z|1|A|A|941
9K0Z|1|A|U|942
9K0Z|1|A|U|943
9K0Z|1|A|C|944
*
9K0Z|1|A|G|955
9K0Z|1|A|A|956
9K0Z|1|A|A|957
9K0Z|1|A|G|958
9K0Z|1|A|A|959
9K0Z|1|A|A|960
9K0Z|1|A|C|961
9K0Z|1|A|C|962
9K0Z|1|A|U|963
9K0Z|1|A|U|964
9K0Z|1|A|A|965
9K0Z|1|A|C|966
*
9K0Z|1|A|G|1202
9K0Z|1|A|G|1203
9K0Z|1|A|C|1204
9K0Z|1|A|U|1205
9K0Z|1|A|U|1206
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Translation elongation factor EF-G
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14B
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: