J3_9K0Z_015
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9K0Z|1|A|U|1164
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_015 not in the Motif Atlas
- Geometric match to J3_4LFB_018
- Geometric discrepancy: 0.1435
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9K0Z|1|A|U|1096
9K0Z|1|A|G|1097
9K0Z|1|A|U|1098
*
9K0Z|1|A|A|1136
9K0Z|1|A|G|1137
9K0Z|1|A|A|1138
9K0Z|1|A|C|1139
9K0Z|1|A|U|1140
9K0Z|1|A|G|1141
9K0Z|1|A|C|1142
*
9K0Z|1|A|G|1156
9K0Z|1|A|A|1157
9K0Z|1|A|G|1158
9K0Z|1|A|G|1159
9K0Z|1|A|A|1160
9K0Z|1|A|A|1161
9K0Z|1|A|G|1162
9K0Z|1|A|G|1163
9K0Z|1|A|U|1164
9K0Z|1|A|G|1165
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14B
- Chain V
- Small ribosomal subunit protein uS2
Coloring options: