J3_9K0Z_019
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 9K0Z|1|h|G|591, 9K0Z|1|h|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_019 not in the Motif Atlas
- Geometric match to J3_8P9A_047
- Geometric discrepancy: 0.0955
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9K0Z|1|h|G|27
9K0Z|1|h|C|28
*
9K0Z|1|h|G|562
9K0Z|1|h|U|563
9K0Z|1|h|G|564
9K0Z|1|h|A|565
9K0Z|1|h|A|566
9K0Z|1|h|A|567
9K0Z|1|h|A|568
9K0Z|1|h|G|569
9K0Z|1|h|U|570
9K0Z|1|h|A|571
9K0Z|1|h|C|572
*
9K0Z|1|h|G|583
9K0Z|1|h|A|584
9K0Z|1|h|G|585
9K0Z|1|h|U|586
9K0Z|1|h|G|587
9K0Z|1|h|A|588
9K0Z|1|h|A|589
9K0Z|1|h|A|590
9K0Z|1|h|G|591
9K0Z|1|h|A|592
9K0Z|1|h|G|593
9K0Z|1|h|U|594
9K0Z|1|h|A|595
9K0Z|1|h|C|596
9K0Z|1|h|C|597
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain U
- Large ribosomal subunit protein uL23
- Chain x
- Large ribosomal subunit protein bL20
- Chain z
- Large ribosomal subunit protein uL22
Coloring options: