J3_9K0Z_020
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 9K0Z|1|h|U|31, 9K0Z|1|h|U|536, 9K0Z|1|h|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9K0Z_020 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.0918
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9K0Z|1|h|C|29
9K0Z|1|h|U|30
9K0Z|1|h|U|31
9K0Z|1|h|G|32
*
9K0Z|1|h|C|533
9K0Z|1|h|G|534
9K0Z|1|h|A|535
9K0Z|1|h|U|536
9K0Z|1|h|A|537
9K0Z|1|h|G|538
9K0Z|1|h|C|539
9K0Z|1|h|G|540
9K0Z|1|h|G|541
9K0Z|1|h|A|542
9K0Z|1|h|U|543
9K0Z|1|h|U|544
9K0Z|1|h|A|545
9K0Z|1|h|G|546
9K0Z|1|h|U|547
9K0Z|1|h|A|548
9K0Z|1|h|C|549
*
9K0Z|1|h|G|556
9K0Z|1|h|G|557
9K0Z|1|h|A|558
9K0Z|1|h|A|559
9K0Z|1|h|U|560
9K0Z|1|h|G|561
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL23
- Chain d
- Large ribosomal subunit protein bL34
- Chain k
- Large ribosomal subunit protein uL4
- Chain x
- Large ribosomal subunit protein bL20
Coloring options: