J3_9K0Z_021

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

9K0Z|1|h|U|69, 9K0Z|1|h|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_021 not in the Motif Atlas

Geometric match to J3_4V9F_014

Geometric discrepancy: 0.0731

The information below is about J3_4V9F_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

9K0Z|1|h|A|53
9K0Z|1|h|C|54
*
9K0Z|1|h|G|67
9K0Z|1|h|A|68
9K0Z|1|h|U|69
9K0Z|1|h|A|70
9K0Z|1|h|A|71
9K0Z|1|h|G|72
9K0Z|1|h|C|73
*
9K0Z|1|h|G|107
9K0Z|1|h|A|108
9K0Z|1|h|U|109
9K0Z|1|h|G|110
9K0Z|1|h|U|111

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain Z

Large ribosomal subunit protein uL29

Chain d

Large ribosomal subunit protein bL34