J3_9K0Z_024

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

9K0Z|1|h|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_024 not in the Motif Atlas

Geometric match to J3_4WF9_015

Geometric discrepancy: 0.1199

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|G|378
9K0Z|1|h|G|379
9K0Z|1|h|A|380
9K0Z|1|h|A|381
9K0Z|1|h|A|382
*
9K0Z|1|h|U|398
9K0Z|1|h|G|399
9K0Z|1|h|C|400
9K0Z|1|h|C|401
9K0Z|1|h|G|402
9K0Z|1|h|U|403
9K0Z|1|h|A|404
9K0Z|1|h|G|405
9K0Z|1|h|A|406
9K0Z|1|h|C|407
*
9K0Z|1|h|G|419
9K0Z|1|h|G|420
9K0Z|1|h|U|421
9K0Z|1|h|A|422
9K0Z|1|h|C|423

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain k

Large ribosomal subunit protein uL4