J3_9K0Z_033

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9K0Z|1|h|A|2421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_033 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.0938

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9K0Z|1|h|U|2314
9K0Z|1|h|U|2315
9K0Z|1|h|G|2316
*
9K0Z|1|h|C|2419
9K0Z|1|h|U|2420
9K0Z|1|h|A|2421
9K0Z|1|h|A|2422
9K0Z|1|h|C|2423
*
9K0Z|1|h|G|2447
9K0Z|1|h|G|2448
9K0Z|1|h|A|2449
9K0Z|1|h|C|2450
9K0Z|1|h|A|2451
9K0Z|1|h|G|2452

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain i

Large ribosomal subunit protein uL2

Chain n

50S ribosomal protein L9