J3_9K0Z_036

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9K0Z|1|h|A|2742, 9K0Z|1|h|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K0Z_036 not in the Motif Atlas

Geometric match to J3_4WF9_009

Geometric discrepancy: 0.094

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|C|2741
9K0Z|1|h|A|2742
9K0Z|1|h|U|2743
9K0Z|1|h|C|2744
*
9K0Z|1|h|G|2769
9K0Z|1|h|U|2770
9K0Z|1|h|U|2771
*
9K0Z|1|h|A|2785
9K0Z|1|h|U|2786
9K0Z|1|h|U|2787
9K0Z|1|h|A|2788
9K0Z|1|h|A|2789
9K0Z|1|h|A|2790
9K0Z|1|h|G|2791

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L14