J3_9K10_007

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

9K10|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_007 not in the Motif Atlas

Geometric match to J3_4WF9_015

Geometric discrepancy: 0.107

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9K10|1|A|G|378
9K10|1|A|G|379
9K10|1|A|A|380
9K10|1|A|A|381
9K10|1|A|A|382
*
9K10|1|A|U|398
9K10|1|A|G|399
9K10|1|A|C|400
9K10|1|A|C|401
9K10|1|A|G|402
9K10|1|A|U|403
9K10|1|A|A|404
9K10|1|A|G|405
9K10|1|A|A|406
9K10|1|A|C|407
*
9K10|1|A|G|419
9K10|1|A|G|420
9K10|1|A|U|421
9K10|1|A|A|422
9K10|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

Large ribosomal subunit protein uL24