J3_9K10_010

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_010 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.2163

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9K10|1|A|G|1173
9K10|1|A|G|1174
9K10|1|A|A|1175
*
9K10|1|A|U|1199
9K10|1|A|U|1200
9K10|1|A|G|1201
9K10|1|A|A|1202
9K10|1|A|A|1203
9K10|1|A|A|1204
9K10|1|A|G|1205
*
9K10|1|A|C|1220
9K10|1|A|A|1221
9K10|1|A|C|1222

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36