J3_9K10_019

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9K10|1|A|A|2742, 9K10|1|A|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9K10_019 not in the Motif Atlas

Geometric match to J3_4WF9_009

Geometric discrepancy: 0.0993

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9K10|1|A|C|2741
9K10|1|A|A|2742
9K10|1|A|U|2743
9K10|1|A|C|2744
*
9K10|1|A|G|2769
9K10|1|A|U|2770
9K10|1|A|U|2771
*
9K10|1|A|A|2785
9K10|1|A|U|2786
9K10|1|A|U|2787
9K10|1|A|A|2788
9K10|1|A|A|2789
9K10|1|A|A|2790
9K10|1|A|G|2791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L14