J3_9K30_002

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UUAAAGUA*UAC*GAUGUA

Length

17 nucleotides

Bulged bases

9K30|1|B|U|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K30|1|B|U|217
9K30|1|B|U|218
9K30|1|B|A|219
9K30|1|B|A|220
9K30|1|B|A|221
9K30|1|B|G|222
9K30|1|B|U|223
9K30|1|B|A|224
*
9K30|1|B|U|261
9K30|1|B|A|262
9K30|1|B|C|263
*
9K30|1|B|G|333
9K30|1|B|A|334
9K30|1|B|U|335
9K30|1|B|G|336
9K30|1|B|U|337
9K30|1|B|A|338

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB