J3_9K30_003

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GACAAC*GGUAAAA*UCCAC

Length

18 nucleotides

Bulged bases

9K30|1|B|A|276, 9K30|1|B|U|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K30|1|B|G|275
9K30|1|B|A|276
9K30|1|B|C|277
9K30|1|B|A|278
9K30|1|B|A|279
9K30|1|B|C|280
*
9K30|1|B|G|297
9K30|1|B|G|298
9K30|1|B|U|299
9K30|1|B|A|300
9K30|1|B|A|301
9K30|1|B|A|302
9K30|1|B|A|303
*
9K30|1|B|U|318
9K30|1|B|C|319
9K30|1|B|C|320
9K30|1|B|A|321
9K30|1|B|C|322

Current chains

Chain B

Omega RNA

Nearby chains