J3_9K31_002

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAG*CA*UAAGGAG

Length

13 nucleotides

Bulged bases

9K31|1|B|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K31|1|B|C|138
9K31|1|B|A|139
9K31|1|B|A|140
9K31|1|B|G|141
*
9K31|1|B|C|160
9K31|1|B|A|161
*
9K31|1|B|U|196
9K31|1|B|A|197
9K31|1|B|A|198
9K31|1|B|G|199
9K31|1|B|G|200
9K31|1|B|A|201
9K31|1|B|G|202

Current chains

Chain B

Guide RNA

Nearby chains