J3_9K31_003

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCCAGAGGAUUAAC*GAAAGG*CAAGGCAAG

Length

29 nucleotides

Bulged bases

9K31|1|B|G|286, 9K31|1|B|A|287, 9K31|1|B|G|288, 9K31|1|B|A|290, 9K31|1|B|U|291, 9K31|1|B|U|292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K31|1|B|C|282
9K31|1|B|C|283
9K31|1|B|C|284
9K31|1|B|A|285
9K31|1|B|G|286
9K31|1|B|A|287
9K31|1|B|G|288
9K31|1|B|G|289
9K31|1|B|A|290
9K31|1|B|U|291
9K31|1|B|U|292
9K31|1|B|A|293
9K31|1|B|A|294
9K31|1|B|C|295
*
9K31|1|B|G|325
9K31|1|B|A|326
9K31|1|B|A|327
9K31|1|B|A|328
9K31|1|B|G|329
9K31|1|B|G|330
*
9K31|1|B|C|345
9K31|1|B|A|346
9K31|1|B|A|347
9K31|1|B|G|348
9K31|1|B|G|349
9K31|1|B|C|350
9K31|1|B|A|351
9K31|1|B|A|352
9K31|1|B|G|353

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

YnpsCas9