J3_9KDV_001

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9KDV|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|112
9KDV|1|L5|A|113
9KDV|1|L5|G|114
9KDV|1|L5|C|115
9KDV|1|L5|G|116
*
9KDV|1|L5|C|155
9KDV|1|L5|G|156
9KDV|1|L5|U|157
9KDV|1|L5|A|158
9KDV|1|L5|C|159
9KDV|1|L5|G|160
*
9KDV|1|L5|C|274
9KDV|1|L5|C|275
9KDV|1|L5|G|276
9KDV|1|L5|G|277

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain Lh

Large ribosomal subunit protein uL29

Chain Li

Large ribosomal subunit protein eL36