J3_9KDV_003

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|U|379
9KDV|1|L5|U|380
9KDV|1|L5|G|381
9KDV|1|L5|A|382
9KDV|1|L5|A|383
9KDV|1|L5|A|384
9KDV|1|L5|A|385
9KDV|1|L5|G|386
*
9KDV|1|L5|C|413
9KDV|1|L5|G|414
*
9KDV|1|L8|C|19
9KDV|1|L8|A|20

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Chain L8

Mus musculus 5.8S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Ll

Large ribosomal subunit protein eL39-like