J3_9KDV_006

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9KDV|1|L5|A|1348, 9KDV|1|L5|G|1455, 9KDV|1|L5|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|U|1345
9KDV|1|L5|G|1346
9KDV|1|L5|A|1347
9KDV|1|L5|A|1348
9KDV|1|L5|C|1349
9KDV|1|L5|U|1350
9KDV|1|L5|A|1351
*
9KDV|1|L5|U|1436
9KDV|1|L5|A|1437
9KDV|1|L5|G|1438
*
9KDV|1|L5|C|1454
9KDV|1|L5|G|1455
9KDV|1|L5|A|1456
9KDV|1|L5|A|1457

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LN

Large ribosomal subunit protein eL15

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39-like