J3_9KDV_011
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|L5|U|2197
9KDV|1|L5|C|2198
9KDV|1|L5|G|2199
9KDV|1|L5|G|2200
9KDV|1|L5|U|2201
9KDV|1|L5|C|2202
*
9KDV|1|L5|G|2272
9KDV|1|L5|G|2273
9KDV|1|L5|A|2274
9KDV|1|L5|G|2275
9KDV|1|L5|U|2276
*
9KDV|1|L5|A|2293
9KDV|1|L5|A|2294
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39-like
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