J3_9KDV_013

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9KDV|1|L5|U|2517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|A|2308
9KDV|1|L5|G|2309
9KDV|1|L5|A|2310
9KDV|1|L5|U|2311
9KDV|1|L5|G|2312
*
9KDV|1|L5|C|2326
9KDV|1|L5|A|2327
9KDV|1|L5|G|2328
9KDV|1|L5|U|2329
*
9KDV|1|L5|A|2511
9KDV|1|L5|G|2512
9KDV|1|L5|G|2513
9KDV|1|L5|G|2514
9KDV|1|L5|U|2515
9KDV|1|L5|G|2516
9KDV|1|L5|U|2517
9KDV|1|L5|A|2518
9KDV|1|L5|A|2519
9KDV|1|L5|A|2520
9KDV|1|L5|U|2521

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27