J3_9KDV_017

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

9KDV|1|L5|C|3990, 9KDV|1|L5|U|4027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|G|3881
9KDV|1|L5|U|3882
9KDV|1|L5|C|3883
*
9KDV|1|L5|G|3984
9KDV|1|L5|C|3985
9KDV|1|L5|C|3986
9KDV|1|L5|U|3987
9KDV|1|L5|C|3988
9KDV|1|L5|A|3989
9KDV|1|L5|C|3990
9KDV|1|L5|G|3991
9KDV|1|L5|A|3992
9KDV|1|L5|U|3993
9KDV|1|L5|C|3994
9KDV|1|L5|C|3995
*
9KDV|1|L5|G|4023
9KDV|1|L5|G|4024
9KDV|1|L5|U|4025
9KDV|1|L5|G|4026
9KDV|1|L5|U|4027
9KDV|1|L5|C|4028

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL18

Chain LT

Large ribosomal subunit protein eL21

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42

Chain S6

Transfer RNA; tRNA