J3_9KDV_020

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUUG*CGUUC*GUUGAACGCACGUUC

Length

24 nucleotides

Bulged bases

9KDV|1|L5|U|4528, 9KDV|1|L5|U|4583, 9KDV|1|L5|U|4584, 9KDV|1|L5|A|4586, 9KDV|1|L5|C|4588, 9KDV|1|L5|A|4591, 9KDV|1|L5|C|4592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|G|4405
9KDV|1|L5|U|4406
9KDV|1|L5|U|4407
9KDV|1|L5|G|4408
*
9KDV|1|L5|C|4525
9KDV|1|L5|G|4526
9KDV|1|L5|U|4527
9KDV|1|L5|U|4528
9KDV|1|L5|C|4529
*
9KDV|1|L5|G|4582
9KDV|1|L5|U|4583
9KDV|1|L5|U|4584
9KDV|1|L5|G|4585
9KDV|1|L5|A|4586
9KDV|1|L5|A|4587
9KDV|1|L5|C|4588
9KDV|1|L5|G|4589
9KDV|1|L5|C|4590
9KDV|1|L5|A|4591
9KDV|1|L5|C|4592
9KDV|1|L5|G|4593
9KDV|1|L5|U|4594
9KDV|1|L5|U|4595
9KDV|1|L5|C|4596

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33