J3_9KDV_029
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|C|1219
9KDV|1|S2|C|1220
9KDV|1|S2|A|1221
9KDV|1|S2|G|1222
*
9KDV|1|S2|C|1646
9KDV|1|S2|C|1647
9KDV|1|S2|A|1648
9KDV|1|S2|G|1649
9KDV|1|S2|U|1650
9KDV|1|S2|A|1651
9KDV|1|S2|A|1652
*
9KDV|1|S2|U|1674
9KDV|1|S2|G|1675
9KDV|1|S2|A|1676
9KDV|1|S2|U|1677
9KDV|1|S2|U|1678
9KDV|1|S2|A|1679
9KDV|1|S2|A|1680
9KDV|1|S2|G|1681
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sc
- Small ribosomal subunit protein eS28
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