J3_9KDV_030
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|U|1226
9KDV|1|S2|G|1227
9KDV|1|S2|G|1228
9KDV|1|S2|A|1229
*
9KDV|1|S2|U|1531
9KDV|1|S2|A|1532
9KDV|1|S2|C|1533
*
9KDV|1|S2|G|1639
9KDV|1|S2|G|1640
9KDV|1|S2|A|1641
9KDV|1|S2|A|1642
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SS
- Small ribosomal subunit protein uS13
- Chain ST
- Small ribosomal subunit protein eS19
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