J3_9KDV_032
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCCCGGACA*UGGGUG*UUAGAUGUC
- Length
- 24 nucleotides
- Bulged bases
- 9KDV|1|S2|G|1275, 9KDV|1|S2|G|1508, 9KDV|1|S2|U|1510
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|G|1271
9KDV|1|S2|C|1272
9KDV|1|S2|C|1273
9KDV|1|S2|C|1274
9KDV|1|S2|G|1275
9KDV|1|S2|G|1276
9KDV|1|S2|A|1277
9KDV|1|S2|C|1278
9KDV|1|S2|A|1279
*
9KDV|1|S2|U|1320
9KDV|1|S2|G|1321
9KDV|1|S2|G|1322
9KDV|1|S2|G|1323
9KDV|1|S2|U|1324
9KDV|1|S2|G|1325
*
9KDV|1|S2|U|1505
9KDV|1|S2|U|1506
9KDV|1|S2|A|1507
9KDV|1|S2|G|1508
9KDV|1|S2|A|1509
9KDV|1|S2|U|1510
9KDV|1|S2|G|1511
9KDV|1|S2|U|1512
9KDV|1|S2|C|1513
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SK
- Small ribosomal subunit protein eS10
- Chain Sd
- Small ribosomal subunit protein uS14
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