J3_9KDV_034

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|U|1351
9KDV|1|S2|G|1352
*
9KDV|1|S2|U|1361
9KDV|1|S2|G|1362
9KDV|1|S2|U|1363
9KDV|1|S2|C|1364
*
9KDV|1|S2|G|1376
9KDV|1|S2|A|1377
9KDV|1|S2|U|1378
9KDV|1|S2|A|1379
9KDV|1|S2|A|1380

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SC

Small ribosomal subunit protein uS5

Chain SR

Small ribosomal subunit protein eS17