J3_9KDV_036

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9KDV|1|S2|U|1536, 9KDV|1|S2|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|C|1533
9KDV|1|S2|A|1534
9KDV|1|S2|C|1535
9KDV|1|S2|U|1536
9KDV|1|S2|G|1537
*
9KDV|1|S2|C|1598
9KDV|1|S2|G|1599
9KDV|1|S2|U|1600
9KDV|1|S2|G|1601
9KDV|1|S2|A|1602
9KDV|1|S2|U|1603
9KDV|1|S2|G|1604
9KDV|1|S2|G|1605
*
9KDV|1|S2|C|1636
9KDV|1|S2|G|1637
9KDV|1|S2|A|1638
9KDV|1|S2|G|1639

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19

Chain SZ

Small ribosomal subunit protein eS25