J3_9KKF_006

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KKF|1|S2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|A|938
9KKF|1|S2|U|939
9KKF|1|S2|U|940
9KKF|1|S2|C|941
*
9KKF|1|S2|G|985
9KKF|1|S2|G|986
9KKF|1|S2|A|987
9KKF|1|S2|C|988
9KKF|1|S2|C|989
9KKF|1|S2|A|990
9KKF|1|S2|G|991
9KKF|1|S2|A|992
9KKF|1|S2|G|993
*
9KKF|1|S2|C|1000
9KKF|1|S2|A|1001
9KKF|1|S2|U|1002
9KKF|1|S2|U|1003
9KKF|1|S2|U|1004

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26