J3_9KKF_015

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9KKF|1|S2|U|1535, 9KKF|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|C|1532
9KKF|1|S2|A|1533
9KKF|1|S2|C|1534
9KKF|1|S2|U|1535
9KKF|1|S2|G|1536
*
9KKF|1|S2|C|1597
9KKF|1|S2|G|1598
9KKF|1|S2|U|1599
9KKF|1|S2|G|1600
9KKF|1|S2|A|1601
9KKF|1|S2|U|1602
9KKF|1|S2|G|1603
9KKF|1|S2|G|1604
*
9KKF|1|S2|C|1635
9KKF|1|S2|G|1636
9KKF|1|S2|A|1637
9KKF|1|S2|G|1638

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25