J3_9KMT_005

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CCAGG*CCAGUAA*UGAUUAAG

Length

20 nucleotides

Bulged bases

9KMT|1|2|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|C|1218
9KMT|1|2|C|1219
9KMT|1|2|A|1220
9KMT|1|2|G|1221
9KMT|1|2|G|1222
*
9KMT|1|2|C|1645
9KMT|1|2|C|1646
9KMT|1|2|A|1647
9KMT|1|2|G|1648
9KMT|1|2|U|1649
9KMT|1|2|A|1650
9KMT|1|2|A|1651
*
9KMT|1|2|U|1673
9KMT|1|2|G|1674
9KMT|1|2|A|1675
9KMT|1|2|U|1676
9KMT|1|2|U|1677
9KMT|1|2|A|1678
9KMT|1|2|A|1679
9KMT|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19

Chain c

Small ribosomal subunit protein eS28