J3_9KMV_003

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KMV|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|A|938
9KMV|1|2|U|939
9KMV|1|2|U|940
9KMV|1|2|C|941
*
9KMV|1|2|G|985
9KMV|1|2|G|986
9KMV|1|2|A|987
9KMV|1|2|C|988
9KMV|1|2|C|989
9KMV|1|2|A|990
9KMV|1|2|G|991
9KMV|1|2|A|992
9KMV|1|2|G|993
*
9KMV|1|2|C|1000
9KMV|1|2|A|1001
9KMV|1|2|U|1002
9KMV|1|2|U|1003
9KMV|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26