J3_9KMW_004

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KMW|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|A|938
9KMW|1|2|U|939
9KMW|1|2|U|940
9KMW|1|2|C|941
*
9KMW|1|2|G|985
9KMW|1|2|G|986
9KMW|1|2|A|987
9KMW|1|2|C|988
9KMW|1|2|C|989
9KMW|1|2|A|990
9KMW|1|2|G|991
9KMW|1|2|A|992
9KMW|1|2|G|993
*
9KMW|1|2|C|1000
9KMW|1|2|A|1001
9KMW|1|2|U|1002
9KMW|1|2|U|1003
9KMW|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26