J3_9KMW_006
3D structure
- PDB id
- 9KMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.73 Å
Loop
- Sequence
- UGGCCGUUCUUAG*CGAGACUC*GAGCAAUAACAGGUCUGUGA
- Length
- 41 nucleotides
- Bulged bases
- 9KMW|1|2|C|1337, 9KMW|1|2|A|1489, 9KMW|1|2|C|1493, 9KMW|1|2|U|1494, 9KMW|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMW|1|2|U|1333
9KMW|1|2|G|1334
9KMW|1|2|G|1335
9KMW|1|2|C|1336
9KMW|1|2|C|1337
9KMW|1|2|G|1338
9KMW|1|2|U|1339
9KMW|1|2|U|1340
9KMW|1|2|C|1341
9KMW|1|2|U|1342
9KMW|1|2|U|1343
9KMW|1|2|A|1344
9KMW|1|2|G|1345
*
9KMW|1|2|C|1384
9KMW|1|2|G|1385
9KMW|1|2|A|1386
9KMW|1|2|G|1387
9KMW|1|2|A|1388
9KMW|1|2|C|1389
9KMW|1|2|U|1390
9KMW|1|2|C|1391
*
9KMW|1|2|G|1479
9KMW|1|2|A|1480
9KMW|1|2|G|1481
9KMW|1|2|C|1482
9KMW|1|2|A|1483
9KMW|1|2|A|1484
9KMW|1|2|U|1485
9KMW|1|2|A|1486
9KMW|1|2|A|1487
9KMW|1|2|C|1488
9KMW|1|2|A|1489
9KMW|1|2|G|1490
9KMW|1|2|G|1491
9KMW|1|2|U|1492
9KMW|1|2|C|1493
9KMW|1|2|U|1494
9KMW|1|2|G|1495
9KMW|1|2|U|1496
9KMW|1|2|G|1497
9KMW|1|2|A|1498
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
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