J3_9KMW_009

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9KMW|1|2|U|1535, 9KMW|1|2|G|1598, 9KMW|1|2|G|1600, 9KMW|1|2|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|1532
9KMW|1|2|A|1533
9KMW|1|2|C|1534
9KMW|1|2|U|1535
9KMW|1|2|G|1536
*
9KMW|1|2|C|1597
9KMW|1|2|G|1598
9KMW|1|2|U|1599
9KMW|1|2|G|1600
9KMW|1|2|A|1601
9KMW|1|2|U|1602
9KMW|1|2|G|1603
9KMW|1|2|G|1604
*
9KMW|1|2|C|1635
9KMW|1|2|G|1636
9KMW|1|2|A|1637
9KMW|1|2|G|1638

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain Z

Small ribosomal subunit protein eS25