J3_9KMX_003

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KMX|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|A|938
9KMX|1|2|U|939
9KMX|1|2|U|940
9KMX|1|2|C|941
*
9KMX|1|2|G|985
9KMX|1|2|G|986
9KMX|1|2|A|987
9KMX|1|2|C|988
9KMX|1|2|C|989
9KMX|1|2|A|990
9KMX|1|2|G|991
9KMX|1|2|A|992
9KMX|1|2|G|993
*
9KMX|1|2|C|1000
9KMX|1|2|A|1001
9KMX|1|2|U|1002
9KMX|1|2|U|1003
9KMX|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26